STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_2033Hypothetical protein; DUF2905 domain-containing protein (64 aa)    
Predicted Functional Partners:
DM42_2032
annotation not available
       0.874
DM42_2031
annotation not available
 
     0.708
DM42_2030
7,8-dihydroneopterin aldolase/epimerase/oxygenase; Diguanylate cyclase; folB_dom: FolB domain protein
 
     0.681
DM42_760
annotation not available
  
     0.633
DM42_733
Hypothetical protein; Uncharacterized protein
  
     0.593
ttcA
Trna 2-thiocytidine biosynthesis protein ttca; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system
       0.587
DM42_1209
annotation not available
  
     0.565
DM42_6203
annotation not available
  
     0.549
DM42_6212
annotation not available
  
     0.527
DM42_1506
annotation not available
  
     0.505
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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