Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DM42_2048

trbJ_Ti- P-type conjugative transfer protein TrbJ (245 aa)

Predicted Functional Partners:

DM42_2047

0.984

DM42_2045

0.981

DM42_2052

0.980

DM42_2051

0.970

DM42_2049

0.969

DM42_2053

0.969

DM42_2050

0.969

DM42_2046

0.966

DM42_2044

0.965

DM42_2043

0.962

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DM42_2043	DM42_2044	Conserved hypothetical protein	annotation not available	0.967
DM42_2043	DM42_2045	Conserved hypothetical protein	trbG_Ti- P-type conjugative transfer protein TrbG	0.966
DM42_2043	DM42_2046	Conserved hypothetical protein	annotation not available	0.965
DM42_2043	DM42_2047	Conserved hypothetical protein	trbL_P- P-type conjugative transfer protein TrbL	0.963
DM42_2043	DM42_2048	Conserved hypothetical protein	trbJ_Ti- P-type conjugative transfer protein TrbJ	0.962
DM42_2043	DM42_2049	Conserved hypothetical protein	annotation not available	0.956
DM42_2043	DM42_2050	Conserved hypothetical protein	annotation not available	0.960
DM42_2043	DM42_2051	Conserved hypothetical protein	annotation not available	0.960
DM42_2043	DM42_2052	Conserved hypothetical protein	trbB_P- P-type conjugative transfer ATPase TrbB	0.925
DM42_2043	DM42_2053	Conserved hypothetical protein	annotation not available	0.962
DM42_2044	DM42_2043	annotation not available	Conserved hypothetical protein	0.967
DM42_2044	DM42_2045	annotation not available	trbG_Ti- P-type conjugative transfer protein TrbG	0.983
DM42_2044	DM42_2046	annotation not available	annotation not available	0.969
DM42_2044	DM42_2047	annotation not available	trbL_P- P-type conjugative transfer protein TrbL	0.967
DM42_2044	DM42_2048	annotation not available	trbJ_Ti- P-type conjugative transfer protein TrbJ	0.965
DM42_2044	DM42_2049	annotation not available	annotation not available	0.969
DM42_2044	DM42_2050	annotation not available	annotation not available	0.965
DM42_2044	DM42_2051	annotation not available	annotation not available	0.966
DM42_2044	DM42_2052	annotation not available	trbB_P- P-type conjugative transfer ATPase TrbB	0.957
DM42_2044	DM42_2053	annotation not available	annotation not available	0.964

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Network

Neighborhood

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Textmining

Cooccurrence

Databases

Coexpression

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