STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_2069acyl-CoA dehydrogenase, N-terminal domain protein (381 aa)    
Predicted Functional Partners:
DM42_2073
annotation not available
 
 0.968
DM42_2072
acCoA-C-Actrans: acetyl-CoA C-acetyltransferase family protein
 
 0.935
DM42_1016
annotation not available
 
  
0.925
bkdB
annotation not available
  
 0.917
DM42_1299
Enoyl-coa hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family
 
 0.886
DM42_4933
acyl-CoA dehydrogenase, N-terminal domain protein
  
  
 
0.860
DM42_2927
DNA alkylation response protein; acyl-CoA dehydrogenase, C-terminal domain protein
  
 
0.852
DM42_5037
acyl-CoA dehydrogenase, N-terminal domain protein
  
  
0.849
DM42_6326
annotation not available
 
 0.849
DM42_2070
annotation not available
 
  
 0.847
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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