Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_30465

annotation not available (163 aa)

Predicted Functional Partners:

WL94_30460

0.806

WL94_26380

0.770

DM42_6400

0.753

WI67_19135

0.713

DM42_6458

0.630

DM42_4595

0.583

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_4595	DM42_6400	DM42_4595	DM42_6400	annotation not available	annotation not available	0.739
DM42_4595	DM42_6458	DM42_4595	DM42_6458	annotation not available	annotation not available	0.560
DM42_4595	WI67_19135	DM42_4595	DM42_4671	annotation not available	annotation not available	0.770
DM42_4595	WL94_26380	DM42_4595	DM42_4109	annotation not available	annotation not available	0.751
DM42_4595	WL94_30465	DM42_4595	DM42_2099	annotation not available	annotation not available	0.583
DM42_6400	DM42_4595	DM42_6400	DM42_4595	annotation not available	annotation not available	0.739
DM42_6400	DM42_6458	DM42_6400	DM42_6458	annotation not available	annotation not available	0.663
DM42_6400	WL94_30465	DM42_6400	DM42_2099	annotation not available	annotation not available	0.753
DM42_6458	DM42_4595	DM42_6458	DM42_4595	annotation not available	annotation not available	0.560
DM42_6458	DM42_6400	DM42_6458	DM42_6400	annotation not available	annotation not available	0.663
DM42_6458	WI67_19135	DM42_6458	DM42_4671	annotation not available	annotation not available	0.602
DM42_6458	WL94_26380	DM42_6458	DM42_4109	annotation not available	annotation not available	0.653
DM42_6458	WL94_30465	DM42_6458	DM42_2099	annotation not available	annotation not available	0.630
WI67_19135	DM42_4595	DM42_4671	DM42_4595	annotation not available	annotation not available	0.770
WI67_19135	DM42_6458	DM42_4671	DM42_6458	annotation not available	annotation not available	0.602
WI67_19135	WL94_30465	DM42_4671	DM42_2099	annotation not available	annotation not available	0.713
WL94_26380	DM42_4595	DM42_4109	DM42_4595	annotation not available	annotation not available	0.751
WL94_26380	DM42_6458	DM42_4109	DM42_6458	annotation not available	annotation not available	0.653
WL94_26380	WL94_30465	DM42_4109	DM42_2099	annotation not available	annotation not available	0.770
WL94_30460	WL94_30465	DM42_2100	DM42_2099	annotation not available	annotation not available	0.806

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Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2019

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