DM42_2153 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

DM42_2153

Uncharacterized protein (107 aa)

Predicted Functional Partners:

WL94_04960

0.764

DM42_3538

0.756

WI67_21510

0.749

WL94_09640

0.741

WL94_39270

0.738

WI67_09765

0.738

DM42_830

0.731

WL94_26175

0.727

WI67_02505

0.721

WI67_29390

0.719

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_2153	DM42_3538	DM42_2153	DM42_3538	Uncharacterized protein	annotation not available	0.756
DM42_2153	DM42_830	DM42_2153	DM42_830	Uncharacterized protein	annotation not available	0.731
DM42_2153	WI67_02505	DM42_2153	DM42_1291	Uncharacterized protein	annotation not available	0.721
DM42_2153	WI67_09765	DM42_2153	DM42_3266	Uncharacterized protein	annotation not available	0.738
DM42_2153	WI67_21510	DM42_2153	DM42_4189	Uncharacterized protein	annotation not available	0.749
DM42_2153	WI67_29390	DM42_2153	DM42_5679	Uncharacterized protein	annotation not available	0.719
DM42_2153	WL94_04960	DM42_2153	DM42_6162	Uncharacterized protein	annotation not available	0.764
DM42_2153	WL94_09640	DM42_2153	DM42_6073	Uncharacterized protein	annotation not available	0.741
DM42_2153	WL94_26175	DM42_2153	DM42_4072	Uncharacterized protein	annotation not available	0.727
DM42_2153	WL94_39270	DM42_2153	DM42_5864	Uncharacterized protein	annotation not available	0.738
DM42_3538	DM42_2153	DM42_3538	DM42_2153	annotation not available	Uncharacterized protein	0.756
DM42_3538	WI67_09765	DM42_3538	DM42_3266	annotation not available	annotation not available	0.719
DM42_3538	WI67_21510	DM42_3538	DM42_4189	annotation not available	annotation not available	0.714
DM42_830	DM42_2153	DM42_830	DM42_2153	annotation not available	Uncharacterized protein	0.731
DM42_830	WI67_09765	DM42_830	DM42_3266	annotation not available	annotation not available	0.717
DM42_830	WI67_21510	DM42_830	DM42_4189	annotation not available	annotation not available	0.685
WI67_02505	DM42_2153	DM42_1291	DM42_2153	annotation not available	Uncharacterized protein	0.721
WI67_02505	WI67_09765	DM42_1291	DM42_3266	annotation not available	annotation not available	0.735
WI67_02505	WI67_21510	DM42_1291	DM42_4189	annotation not available	annotation not available	0.700
WI67_09765	DM42_2153	DM42_3266	DM42_2153	annotation not available	Uncharacterized protein	0.738

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