STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_2177annotation not available (214 aa)    
Predicted Functional Partners:
DM42_2176
annotation not available
       0.874
DM42_2175
annotation not available
 
     0.716
DM42_2174
Cholesterol transport system auxiliary component; ABC transporter
 
     0.581
DM42_2173
annotation not available
 
     0.499
DM42_1975
annotation not available
 
     0.489
DM42_2178
Serine-type d-ala-d-ala carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family
 
     0.477
coaX
Pantothenate kinase, type iii family protein; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
  
    0.474
DM42_1185
Protoporphyrinogen ix oxidase; Uncharacterized protein
 
     0.460
DM42_2650
annotation not available
  
     0.449
yhcM
annotation not available
 
    0.441
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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