cmpD_6 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

cmpD_6

Taurine transport system atp-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system (265 aa)

Predicted Functional Partners:

tauA

0.997

DM42_2187

0.996

tauD_4

0.930

DM42_6984

0.930

DM42_6769

0.819

DM42_6842

0.726

DM42_3966

0.724

DM42_3967

0.719

DM42_4536

0.719

DM42_3118

0.709

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_2187	DM42_6984	DM42_2187	DM42_6984	annotation not available	annotation not available	0.936
DM42_2187	cmpD_6	DM42_2187	DM42_2186	annotation not available	Taurine transport system atp-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system	0.996
DM42_2187	tauA	DM42_2187	DM42_2185	annotation not available	taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein	0.994
DM42_2187	tauD_4	DM42_2187	DM42_11	annotation not available	annotation not available	0.932
DM42_3118	cmpD_6	DM42_3118	DM42_2186	annotation not available	Taurine transport system atp-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system	0.709
DM42_3118	tauA	DM42_3118	DM42_2185	annotation not available	taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein	0.573
DM42_3966	DM42_3967	DM42_3966	DM42_3967	annotation not available	annotation not available	0.801
DM42_3966	cmpD_6	DM42_3966	DM42_2186	annotation not available	Taurine transport system atp-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system	0.724
DM42_3966	tauA	DM42_3966	DM42_2185	annotation not available	taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein	0.707
DM42_3967	DM42_3966	DM42_3967	DM42_3966	annotation not available	annotation not available	0.801
DM42_3967	DM42_6769	DM42_3967	DM42_6769	annotation not available	annotation not available	0.672
DM42_3967	cmpD_6	DM42_3967	DM42_2186	annotation not available	Taurine transport system atp-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system	0.719
DM42_3967	tauA	DM42_3967	DM42_2185	annotation not available	taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein	0.709
DM42_4536	cmpD_6	DM42_4536	DM42_2186	annotation not available	Taurine transport system atp-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system	0.719
DM42_4536	tauA	DM42_4536	DM42_2185	annotation not available	taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein	0.678
DM42_6769	DM42_3967	DM42_6769	DM42_3967	annotation not available	annotation not available	0.672
DM42_6769	cmpD_6	DM42_6769	DM42_2186	annotation not available	Taurine transport system atp-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system	0.819
DM42_6769	tauA	DM42_6769	DM42_2185	annotation not available	taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein	0.777
DM42_6842	cmpD_6	DM42_6842	DM42_2186	annotation not available	Taurine transport system atp-binding protein; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system	0.726
DM42_6842	tauA	DM42_6842	DM42_2185	annotation not available	taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein	0.585

page 1 of 3

Server load: low (10%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2022

Credits

Access

Info

About