STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmpD_6Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system (265 aa)    
Predicted Functional Partners:
tauA
taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein
 
 
 0.997
DM42_2187
annotation not available
 
 0.996
tauD_4
annotation not available
 
 
  0.930
DM42_6984
annotation not available
 
 
  0.930
DM42_6769
annotation not available
 
  
 0.819
DM42_6842
annotation not available
  
 0.726
DM42_3966
annotation not available
  
 0.724
DM42_3967
annotation not available
  
 0.719
DM42_4536
annotation not available
  
 0.719
DM42_3118
annotation not available
  
 0.709
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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