actP protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

actP

Cation acetate symporter; Sss- transporter, solute-sodium symporter family protein; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family (561 aa)

Predicted Functional Partners:

WL94_25505

0.986

DM42_6493

0.923

WL94_25500

0.567

dctA

0.532

WL94_25495

0.519

WL94_25485

0.511

WL94_25490

0.502

WL94_13680

0.406

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_6493	actP	DM42_6493	DM42_2195	Conserved hypothetical protein	Cation acetate symporter; Sss- transporter, solute-sodium symporter family protein; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family	0.923
WL94_13680	actP	DM42_2197	DM42_2195	annotation not available	Cation acetate symporter; Sss- transporter, solute-sodium symporter family protein; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family	0.406
WL94_13680	dctA	DM42_2197	DM42_2196	annotation not available	C4-dicarboxylate transport protein; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate across the membrane	0.858
WL94_25485	WL94_25490	DM42_2190	DM42_2191	annotation not available	Pimeloyl-CoA dehydrogenase large subunit; acyl-CoA dehydrogenase, N-terminal domain protein	0.938
WL94_25485	WL94_25495	DM42_2190	DM42_2192	annotation not available	Pimeloyl-CoA dehydrogenase small subunit; acyl-CoA dehydrogenase, N-terminal domain protein	0.926
WL94_25485	WL94_25500	DM42_2190	DM42_2193	annotation not available	annotation not available	0.668
WL94_25485	WL94_25505	DM42_2190	DM42_2194	annotation not available	Uncharacterized protein	0.537
WL94_25485	actP	DM42_2190	DM42_2195	annotation not available	Cation acetate symporter; Sss- transporter, solute-sodium symporter family protein; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family	0.511
WL94_25490	WL94_25485	DM42_2191	DM42_2190	Pimeloyl-CoA dehydrogenase large subunit; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.938
WL94_25490	WL94_25495	DM42_2191	DM42_2192	Pimeloyl-CoA dehydrogenase large subunit; acyl-CoA dehydrogenase, N-terminal domain protein	Pimeloyl-CoA dehydrogenase small subunit; acyl-CoA dehydrogenase, N-terminal domain protein	0.889
WL94_25490	WL94_25500	DM42_2191	DM42_2193	Pimeloyl-CoA dehydrogenase large subunit; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.735
WL94_25490	WL94_25505	DM42_2191	DM42_2194	Pimeloyl-CoA dehydrogenase large subunit; acyl-CoA dehydrogenase, N-terminal domain protein	Uncharacterized protein	0.504
WL94_25490	actP	DM42_2191	DM42_2195	Pimeloyl-CoA dehydrogenase large subunit; acyl-CoA dehydrogenase, N-terminal domain protein	Cation acetate symporter; Sss- transporter, solute-sodium symporter family protein; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family	0.502
WL94_25495	WL94_25485	DM42_2192	DM42_2190	Pimeloyl-CoA dehydrogenase small subunit; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.926
WL94_25495	WL94_25490	DM42_2192	DM42_2191	Pimeloyl-CoA dehydrogenase small subunit; acyl-CoA dehydrogenase, N-terminal domain protein	Pimeloyl-CoA dehydrogenase large subunit; acyl-CoA dehydrogenase, N-terminal domain protein	0.889
WL94_25495	WL94_25500	DM42_2192	DM42_2193	Pimeloyl-CoA dehydrogenase small subunit; acyl-CoA dehydrogenase, N-terminal domain protein	annotation not available	0.770
WL94_25495	WL94_25505	DM42_2192	DM42_2194	Pimeloyl-CoA dehydrogenase small subunit; acyl-CoA dehydrogenase, N-terminal domain protein	Uncharacterized protein	0.522
WL94_25495	actP	DM42_2192	DM42_2195	Pimeloyl-CoA dehydrogenase small subunit; acyl-CoA dehydrogenase, N-terminal domain protein	Cation acetate symporter; Sss- transporter, solute-sodium symporter family protein; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family	0.519
WL94_25500	WL94_25485	DM42_2193	DM42_2190	annotation not available	annotation not available	0.668
WL94_25500	WL94_25490	DM42_2193	DM42_2191	annotation not available	Pimeloyl-CoA dehydrogenase large subunit; acyl-CoA dehydrogenase, N-terminal domain protein	0.735

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About