WI67_15125 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

WI67_15125

annotation not available (264 aa)

Predicted Functional Partners:

WI67_15130

0.984

WL94_13880

0.932

DM42_2243

0.500

WL94_13900

0.500

WI67_15120

0.500

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_2243	WI67_15120	DM42_2243	DM42_2241	Polc- DNA polymerase III, alpha subunit	annotation not available	0.976
DM42_2243	WI67_15125	DM42_2243	DM42_2240	Polc- DNA polymerase III, alpha subunit	annotation not available	0.500
DM42_2243	WI67_15130	DM42_2243	DM42_2239	Polc- DNA polymerase III, alpha subunit	annotation not available	0.500
DM42_2243	WL94_13900	DM42_2243	DM42_2242	Polc- DNA polymerase III, alpha subunit	annotation not available	0.990
WI67_15120	DM42_2243	DM42_2241	DM42_2243	annotation not available	Polc- DNA polymerase III, alpha subunit	0.976
WI67_15120	WI67_15125	DM42_2241	DM42_2240	annotation not available	annotation not available	0.500
WI67_15120	WI67_15130	DM42_2241	DM42_2239	annotation not available	annotation not available	0.500
WI67_15120	WL94_13900	DM42_2241	DM42_2242	annotation not available	annotation not available	0.983
WI67_15125	DM42_2243	DM42_2240	DM42_2243	annotation not available	Polc- DNA polymerase III, alpha subunit	0.500
WI67_15125	WI67_15120	DM42_2240	DM42_2241	annotation not available	annotation not available	0.500
WI67_15125	WI67_15130	DM42_2240	DM42_2239	annotation not available	annotation not available	0.984
WI67_15125	WL94_13880	DM42_2240	DM42_2238	annotation not available	annotation not available	0.932
WI67_15125	WL94_13900	DM42_2240	DM42_2242	annotation not available	annotation not available	0.500
WI67_15130	DM42_2243	DM42_2239	DM42_2243	annotation not available	Polc- DNA polymerase III, alpha subunit	0.500
WI67_15130	WI67_15120	DM42_2239	DM42_2241	annotation not available	annotation not available	0.500
WI67_15130	WI67_15125	DM42_2239	DM42_2240	annotation not available	annotation not available	0.984
WI67_15130	WL94_13880	DM42_2239	DM42_2238	annotation not available	annotation not available	0.984
WI67_15130	WL94_13900	DM42_2239	DM42_2242	annotation not available	annotation not available	0.500
WL94_13880	WI67_15125	DM42_2238	DM42_2240	annotation not available	annotation not available	0.932
WL94_13880	WI67_15130	DM42_2238	DM42_2239	annotation not available	annotation not available	0.984

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