Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplD | rplJ | DM42_1472 | DM42_1483 | Large subunit ribosomal protein l4; Forms part of the polypeptide exit tunnel | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | 0.999 |
| rplD | rplK | DM42_1472 | DM42_1485 | Large subunit ribosomal protein l4; Forms part of the polypeptide exit tunnel | Large subunit ribosomal protein l11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors | 0.999 |
| rplD | rplM | DM42_1472 | DM42_1163 | Large subunit ribosomal protein l4; Forms part of the polypeptide exit tunnel | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | 0.999 |
| rplD | rplU | DM42_1472 | DM42_1258 | Large subunit ribosomal protein l4; Forms part of the polypeptide exit tunnel | Large subunit ribosomal protein l21; This protein binds to 23S rRNA in the presence of protein L20 | 0.999 |
| rplD | rplV | DM42_1472 | DM42_1468 | Large subunit ribosomal protein l4; Forms part of the polypeptide exit tunnel | Large subunit ribosomal protein l22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome | 0.999 |
| rplD | rplY | DM42_1472 | DM42_2266 | Large subunit ribosomal protein l4; Forms part of the polypeptide exit tunnel | Large subunit ribosomal protein l25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance | 0.999 |
| rplD | rpmA | DM42_1472 | DM42_1257 | Large subunit ribosomal protein l4; Forms part of the polypeptide exit tunnel | Large subunit ribosomal protein l27; Belongs to the bacterial ribosomal protein bL27 family | 0.999 |
| rplD | rpsB | DM42_1472 | DM42_3079 | Large subunit ribosomal protein l4; Forms part of the polypeptide exit tunnel | Small subunit ribosomal protein s2; Belongs to the universal ribosomal protein uS2 family | 0.999 |
| rplD | rpsD | DM42_1472 | DM42_1448 | Large subunit ribosomal protein l4; Forms part of the polypeptide exit tunnel | Small subunit ribosomal protein s4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit | 0.999 |
| rplD | rpsM | DM42_1472 | DM42_1450 | Large subunit ribosomal protein l4; Forms part of the polypeptide exit tunnel | Small subunit ribosomal protein s13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites | 0.999 |
| rplJ | rplD | DM42_1483 | DM42_1472 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l4; Forms part of the polypeptide exit tunnel | 0.999 |
| rplJ | rplK | DM42_1483 | DM42_1485 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors | 0.999 |
| rplJ | rplM | DM42_1483 | DM42_1163 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly | 0.999 |
| rplJ | rplU | DM42_1483 | DM42_1258 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l21; This protein binds to 23S rRNA in the presence of protein L20 | 0.999 |
| rplJ | rplV | DM42_1483 | DM42_1468 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome | 0.999 |
| rplJ | rplY | DM42_1483 | DM42_2266 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance | 0.999 |
| rplJ | rpmA | DM42_1483 | DM42_1257 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Large subunit ribosomal protein l27; Belongs to the bacterial ribosomal protein bL27 family | 0.999 |
| rplJ | rpsB | DM42_1483 | DM42_3079 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Small subunit ribosomal protein s2; Belongs to the universal ribosomal protein uS2 family | 0.999 |
| rplJ | rpsD | DM42_1483 | DM42_1448 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Small subunit ribosomal protein s4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit | 0.999 |
| rplJ | rpsM | DM42_1483 | DM42_1450 | Large subunit ribosomal protein l10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors | Small subunit ribosomal protein s13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites | 0.999 |
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