STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_2285Monovalent cation:h+ antiporter-2, cpa2 family; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family (668 aa)    
Predicted Functional Partners:
DM42_4284
annotation not available
  
 
 0.898
DM42_7310
annotation not available
  
 
 0.898
DM42_2284
Sugar isomerase, kpsf/gutq family protein; Belongs to the SIS family. GutQ/KpsF subfamily
  
  
 0.824
nhaA
Na+/h+ antiporter nhaa; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons
     
 0.819
lptA
Lipopolysaccharide transport periplasmic protein lpta; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane
 
 
   0.813
lptC
annotation not available
 
     0.806
DM42_7227
annotation not available
  
  
 0.805
DM42_239
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone
  
  
 0.799
DM42_7298
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone
  
  
 0.799
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
       0.784
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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