Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DM42_2314

annotation not available (403 aa)

Predicted Functional Partners:

WL94_14650

0.847

WL94_14625

0.817

DM42_2302

0.816

WL94_14635

0.781

WL94_14595

0.766

WL94_14620

0.764

WL94_14610

0.762

WL94_14640

0.731

WL94_14615

0.701

WL94_14600

0.681

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_2302	DM42_2314	DM42_2302	DM42_2314	annotation not available	annotation not available	0.816
DM42_2302	WL94_14595	DM42_2302	DM42_2303	annotation not available	Beta-ketoacyl synthase, N-terminal domain protein	0.976
DM42_2302	WL94_14600	DM42_2302	DM42_2304	annotation not available	3-oxoacyl-ACP synthase; Thiolase, N-terminal domain protein; Belongs to the beta-ketoacyl-ACP synthases family	0.975
DM42_2302	WL94_14610	DM42_2302	DM42_2306	annotation not available	annotation not available	0.951
DM42_2302	WL94_14615	DM42_2302	DM42_2307	annotation not available	annotation not available	0.947
DM42_2302	WL94_14620	DM42_2302	DM42_2308	annotation not available	annotation not available	0.951
DM42_2302	WL94_14625	DM42_2302	DM42_2309	annotation not available	annotation not available	0.947
DM42_2302	WL94_14635	DM42_2302	DM42_2312	annotation not available	annotation not available	0.867
DM42_2302	WL94_14640	DM42_2302	DM42_2313	annotation not available	annotation not available	0.825
DM42_2302	WL94_14650	DM42_2302	DM42_2315	annotation not available	annotation not available	0.806
DM42_2314	DM42_2302	DM42_2314	DM42_2302	annotation not available	annotation not available	0.816
DM42_2314	WL94_14595	DM42_2314	DM42_2303	annotation not available	Beta-ketoacyl synthase, N-terminal domain protein	0.766
DM42_2314	WL94_14600	DM42_2314	DM42_2304	annotation not available	3-oxoacyl-ACP synthase; Thiolase, N-terminal domain protein; Belongs to the beta-ketoacyl-ACP synthases family	0.681
DM42_2314	WL94_14610	DM42_2314	DM42_2306	annotation not available	annotation not available	0.762
DM42_2314	WL94_14615	DM42_2314	DM42_2307	annotation not available	annotation not available	0.701
DM42_2314	WL94_14620	DM42_2314	DM42_2308	annotation not available	annotation not available	0.764
DM42_2314	WL94_14625	DM42_2314	DM42_2309	annotation not available	annotation not available	0.817
DM42_2314	WL94_14635	DM42_2314	DM42_2312	annotation not available	annotation not available	0.781
DM42_2314	WL94_14640	DM42_2314	DM42_2313	annotation not available	annotation not available	0.731
DM42_2314	WL94_14650	DM42_2314	DM42_2315	annotation not available	annotation not available	0.847

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Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

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