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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_2324OMP85_target: outer membrane insertion C-terminal signal domain protein (333 aa)    
Predicted Functional Partners:
WL94_01160
annotation not available
  
     0.666
DM42_412
annotation not available
  
     0.654
WL94_01090
Plasmid replication region DNA-binding N-term family protein
  
     0.646
WI67_30465
annotation not available
  
     0.643
WL94_01095
annotation not available
  
     0.634
WL94_21085
Uncharacterized protein
  
     0.632
DM42_3498
Conserved hypothetical protein
  
     0.621
DM42_3631
Conserved hypothetical protein
  
     0.616
DM42_3496
Conserved hypothetical protein
  
     0.609
DM42_1640
Conserved hypothetical protein
  
     0.608
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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