Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WI67_14545

annotation not available (255 aa)

Predicted Functional Partners:

WI67_14550

0.776

WI67_14555

0.742

WL94_14830

0.698

WL94_05820

0.602

WL94_24035

0.602

WL94_24040

0.584

WL94_33095

0.549

WI67_28820

0.536

fabG

0.529

WI67_13080

0.529

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but resolution at 400 dpi

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

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TSV: tab separated values - can be opened in Excel

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
WI67_13080	WI67_14545	DM42_2656	DM42_2354	annotation not available	annotation not available	0.529
WI67_13080	WL94_05820	DM42_2656	DM42_6334	annotation not available	annotation not available	0.540
WI67_13080	WL94_24035	DM42_2656	DM42_2833	annotation not available	annotation not available	0.540
WI67_13080	WL94_24040	DM42_2656	DM42_2832	annotation not available	annotation not available	0.540
WI67_14545	WI67_13080	DM42_2354	DM42_2656	annotation not available	annotation not available	0.529
WI67_14545	WI67_14550	DM42_2354	DM42_2353	annotation not available	acCoA-C-Actrans- acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	0.776
WI67_14545	WI67_14555	DM42_2354	DM42_2352	annotation not available	annotation not available	0.742
WI67_14545	WI67_28820	DM42_2354	DM42_5798	annotation not available	acyl-CoA dehydrogenase, N-terminal domain protein	0.536
WI67_14545	WL94_05820	DM42_2354	DM42_6334	annotation not available	annotation not available	0.602
WI67_14545	WL94_14830	DM42_2354	DM42_2351	annotation not available	acyl-CoA dehydrogenase, N-terminal domain protein	0.698
WI67_14545	WL94_24035	DM42_2354	DM42_2833	annotation not available	annotation not available	0.602
WI67_14545	WL94_24040	DM42_2354	DM42_2832	annotation not available	annotation not available	0.584
WI67_14545	WL94_33095	DM42_2354	DM42_6699	annotation not available	acyl-CoA dehydrogenase, C-terminal domain protein	0.549
WI67_14545	fabG	DM42_2354	DM42_703	annotation not available	Beta-ketoacyl-ACP reductase; 3oxo_ACP_reduc- 3-oxoacyl-[acyl-carrier-protein] reductase	0.529
WI67_14550	WI67_14545	DM42_2353	DM42_2354	acCoA-C-Actrans- acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	annotation not available	0.776
WI67_14550	WI67_14555	DM42_2353	DM42_2352	acCoA-C-Actrans- acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	annotation not available	0.997
WI67_14550	WL94_05820	DM42_2353	DM42_6334	acCoA-C-Actrans- acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	annotation not available	0.415
WI67_14550	WL94_14830	DM42_2353	DM42_2351	acCoA-C-Actrans- acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	acyl-CoA dehydrogenase, N-terminal domain protein	0.610
WI67_14550	WL94_24035	DM42_2353	DM42_2833	acCoA-C-Actrans- acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	annotation not available	0.415
WI67_14550	WL94_24040	DM42_2353	DM42_2832	acCoA-C-Actrans- acetyl-CoA C-acetyltransferase family protein; Belongs to the thiolase family	annotation not available	0.411

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Coexpression

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