STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_2389annotation not available (360 aa)    
Predicted Functional Partners:
DM42_2390
mocE_fam_FeS: Rieske [2Fe-2S] domain , MocE subfamily protein
  
 0.991
DM42_2388
annotation not available
 
     0.851
DM42_2391
annotation not available
 
   
 0.828
DM42_2386
annotation not available
 
     0.743
dmpP
annotation not available
 
      0.655
DM42_5280
Conserved hypothetical protein
  
     0.504
DM42_5965
annotation not available
  
   
 0.466
DM42_1823
Conserved hypothetical protein
  
     0.452
WL94_27255
Aconitase subunit 1
  
     0.451
DM42_2385
Oxidoreductase family, C-terminal alpha/beta domain protein
 
    0.436
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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