STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YihYyihY_not_rbn: YihY family inner membrane domain protein (442 aa)    
Predicted Functional Partners:
hemL
hemL: glutamate-1-semialdehyde-2,1-aminomutase
      
 0.744
wrbA
Nad(p)h dehydrogenase (quinone); Belongs to the WrbA family
       0.721
DM42_246
Hypothetical protein; Uncharacterized protein
       0.721
DM42_247
annotation not available
     
 0.705
argS
Arginyl-trna synthetase; argS: arginine--tRNA ligase
     
 0.633
glgX
Glycogen debranching enzyme glgx; Belongs to the glycosyl hydrolase 13 family
     
 0.621
nuoG
Nadh dehydrogenase (quinone), g subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
      
 0.550
DM42_2977
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2
  
   0.514
DM42_248
annotation not available
       0.484
ligD
Bifunctional non-homologous end joining protein ligd; NHEJ_ligase_prk: DNA ligase D
       0.467
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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