STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_2469Zinc/manganese transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family (303 aa)    
Predicted Functional Partners:
mntB
annotation not available
  
 0.995
DM42_2468
annotation not available
 
  
 0.980
zur
Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family
     
 0.826
DM42_6203
annotation not available
     
 0.710
purL
Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate
     
 0.679
DM42_5765
Non-ribosomal peptide synthetase; AA-adenyl-dom: amino acid adenylation domain protein
  
    0.623
polA
In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
       0.482
polS
annotation not available
 
 
   0.449
fur
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family
     
 0.443
rpsN
Small subunit ribosomal protein s14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
  
  
 0.426
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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