STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_2472Hypothetical protein; Carbohydrate kinase (318 aa)    
Predicted Functional Partners:
DM42_2473
agaZ_gatZ: D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit
 
   
 0.925
pgi
Phosphoglucose isomerase family protein; Belongs to the GPI family
    
 0.919
DM42_3683
Fructan beta-fructosidase; Glycosyl hydrolases family 32 N-terminal domain protein
   
 0.918
DM42_2484
annotation not available
    
 0.914
DM42_4847
Putative phosphofructokinase pfkb; Belongs to the carbohydrate kinase PfkB family
    
 0.914
xylA
Belongs to the xylose isomerase family
     
 0.911
DM42_3804
Glycosyl hydrolases 31 family protein; Belongs to the glycosyl hydrolase 31 family
    
 0.905
fbp_2
Fructose-1-6-bisphosphatase family protein; Belongs to the FBPase class 1 family
   
 
 0.905
DM42_156
annotation not available
  
  
 
0.837
DM42_2035
Belongs to the carbohydrate kinase PfkB family
  
  
 
0.833
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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