STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_2489annotation not available (468 aa)    
Predicted Functional Partners:
benD
annotation not available
 
   0.567
mdlC
annotation not available
 
   
 0.565
benB
benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit
 
    0.545
DM42_2487
annotation not available
 
    0.528
cbdA
annotation not available
 
     0.518
WL94_37430
annotation not available
 
     0.491
DM42_2485
annotation not available
 
     0.479
WL94_06590
annotation not available
  
 
   0.476
DM42_2488
apbA_panE: 2-dehydropantoate 2-reductase family protein
       0.471
WL94_37410
Muconate lactonizing enzyme; Belongs to the mandelate racemase/muconate lactonizing enzyme family
 
   0.467
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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