WL94_08905 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_08905

annotation not available (406 aa)

Predicted Functional Partners:

DM42_2498

0.807

pdxH

0.574

DM42_6909

0.547

DM42_6910

0.449

clpS

0.412

WI67_13840

0.407

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_2498	WL94_08905	DM42_2498	DM42_2499	Conserved hypothetical protein	annotation not available	0.807
DM42_2498	pdxH	DM42_2498	DM42_2500	Conserved hypothetical protein	Pyridoxine/pyridoxamine 5’-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5’- phosphate (PNP) or pyridoxamine 5’-phosphate (PMP) into pyridoxal 5’-phosphate (PLP)	0.505
DM42_6909	DM42_6910	DM42_6909	DM42_6910	annotation not available	Conserved hypothetical protein	0.982
DM42_6909	WL94_08905	DM42_6909	DM42_2499	annotation not available	annotation not available	0.547
DM42_6910	DM42_6909	DM42_6910	DM42_6909	Conserved hypothetical protein	annotation not available	0.982
DM42_6910	WL94_08905	DM42_6910	DM42_2499	Conserved hypothetical protein	annotation not available	0.449
WI67_13840	WL94_08905	DM42_2501	DM42_2499	annotation not available	annotation not available	0.407
WI67_13840	pdxH	DM42_2501	DM42_2500	annotation not available	Pyridoxine/pyridoxamine 5’-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5’- phosphate (PNP) or pyridoxamine 5’-phosphate (PMP) into pyridoxal 5’-phosphate (PLP)	0.682
WL94_08905	DM42_2498	DM42_2499	DM42_2498	annotation not available	Conserved hypothetical protein	0.807
WL94_08905	DM42_6909	DM42_2499	DM42_6909	annotation not available	annotation not available	0.547
WL94_08905	DM42_6910	DM42_2499	DM42_6910	annotation not available	Conserved hypothetical protein	0.449
WL94_08905	WI67_13840	DM42_2499	DM42_2501	annotation not available	annotation not available	0.407
WL94_08905	clpS	DM42_2499	DM42_2548	annotation not available	ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation	0.412
WL94_08905	pdxH	DM42_2499	DM42_2500	annotation not available	Pyridoxine/pyridoxamine 5’-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5’- phosphate (PNP) or pyridoxamine 5’-phosphate (PMP) into pyridoxal 5’-phosphate (PLP)	0.574
clpS	WL94_08905	DM42_2548	DM42_2499	ATP-dependent Clp protease adapter protein ClpS; Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation	annotation not available	0.412
pdxH	DM42_2498	DM42_2500	DM42_2498	Pyridoxine/pyridoxamine 5’-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5’- phosphate (PNP) or pyridoxamine 5’-phosphate (PMP) into pyridoxal 5’-phosphate (PLP)	Conserved hypothetical protein	0.505
pdxH	WI67_13840	DM42_2500	DM42_2501	Pyridoxine/pyridoxamine 5’-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5’- phosphate (PNP) or pyridoxamine 5’-phosphate (PMP) into pyridoxal 5’-phosphate (PLP)	annotation not available	0.682
pdxH	WL94_08905	DM42_2500	DM42_2499	Pyridoxine/pyridoxamine 5’-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5’- phosphate (PNP) or pyridoxamine 5’-phosphate (PMP) into pyridoxal 5’-phosphate (PLP)	annotation not available	0.574

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About