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xerD protein (Burkholderia cepacia) - STRING interaction network
"xerD" - recomb_XerD: tyrosine recombinase XerD in Burkholderia cepacia
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
xerDrecomb_XerD- tyrosine recombinase XerD (316 aa)    
Predicted Functional Partners:
WI67_13805
Ogt- methylated-DNA-[]-cysteine S-methyltransferase family protein (156 aa)
 
 
 
  0.920
WI67_13815
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; T6A_YjeE- tRNA threonylcarbamoyl adenosine modification protein YjeE (184 aa)
 
      0.681
queG
Epoxyqueuosine reductase; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr); Belongs to the QueG family (411 aa)
         
  0.667
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (917 aa)
 
   
  0.666
xerC
recomb_XerC- tyrosine recombinase XerC; Belongs to the ’phage’ integrase family. XerC subfamily (306 aa)
   
 
0.657
rpsA
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (570 aa)
 
     
  0.639
recJ
recJ- single-stranded-DNA-specific exonuclease RecJ (565 aa)
 
   
  0.603
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway (317 aa)
         
  0.576
mfd
Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site (1156 aa)
 
 
 
  0.566
WL94_08935
annotation not available (508 aa)
   
        0.559
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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