Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DM42_2359 | DM42_3569 | DM42_2359 | DM42_3569 | annotation not available | annotation not available | 0.807 |
DM42_2359 | murA | DM42_2359 | DM42_1398 | annotation not available | Udp-n-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine | 0.807 |
DM42_2359 | murB | DM42_2359 | DM42_2514 | annotation not available | Udp-n-acetylenolpyruvoylglucosamine reductase; Cell wall formation | 0.900 |
DM42_2359 | murC | DM42_2359 | DM42_1279 | annotation not available | Udp-n-acetylmuramate--alanine ligase; Cell wall formation | 0.800 |
DM42_3569 | DM42_2359 | DM42_3569 | DM42_2359 | annotation not available | annotation not available | 0.807 |
DM42_3569 | ftsW | DM42_3569 | DM42_1281 | annotation not available | Cell division protein ftsw; Peptidoglycan polymerase that is essential for cell division | 0.504 |
DM42_3569 | murA | DM42_3569 | DM42_1398 | annotation not available | Udp-n-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine | 0.815 |
DM42_3569 | murB | DM42_3569 | DM42_2514 | annotation not available | Udp-n-acetylenolpyruvoylglucosamine reductase; Cell wall formation | 0.947 |
DM42_3569 | murC | DM42_3569 | DM42_1279 | annotation not available | Udp-n-acetylmuramate--alanine ligase; Cell wall formation | 0.473 |
DM42_3569 | murD | DM42_3569 | DM42_1282 | annotation not available | Udp-n-acetylmuramoylalanine--d-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) | 0.532 |
DM42_3569 | murE | DM42_3569 | DM42_1285 | annotation not available | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan | 0.546 |
DM42_3569 | murF | DM42_3569 | DM42_1284 | annotation not available | Udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase family protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein | 0.485 |
DM42_3569 | murG | DM42_3569 | DM42_1280 | annotation not available | Udp-n-acetylglucosamine--n-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II) | 0.526 |
era | murB | DM42_691 | DM42_2514 | Gtp-binding protein era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism | Udp-n-acetylenolpyruvoylglucosamine reductase; Cell wall formation | 0.822 |
ftsW | DM42_3569 | DM42_1281 | DM42_3569 | Cell division protein ftsw; Peptidoglycan polymerase that is essential for cell division | annotation not available | 0.504 |
ftsW | murA | DM42_1281 | DM42_1398 | Cell division protein ftsw; Peptidoglycan polymerase that is essential for cell division | Udp-n-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine | 0.582 |
ftsW | murB | DM42_1281 | DM42_2514 | Cell division protein ftsw; Peptidoglycan polymerase that is essential for cell division | Udp-n-acetylenolpyruvoylglucosamine reductase; Cell wall formation | 0.831 |
ftsW | murC | DM42_1281 | DM42_1279 | Cell division protein ftsw; Peptidoglycan polymerase that is essential for cell division | Udp-n-acetylmuramate--alanine ligase; Cell wall formation | 0.988 |
ftsW | murD | DM42_1281 | DM42_1282 | Cell division protein ftsw; Peptidoglycan polymerase that is essential for cell division | Udp-n-acetylmuramoylalanine--d-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA) | 0.996 |
ftsW | murE | DM42_1281 | DM42_1285 | Cell division protein ftsw; Peptidoglycan polymerase that is essential for cell division | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan | 0.984 |
page 1 of 5