argF protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

argF

Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline (309 aa)

Predicted Functional Partners:

argJ

0.982

argG

0.979

carB

0.971

WL94_36985

0.937

WI67_10330

0.937

argA

0.914

carA

0.898

argB

0.874

DM42_963

0.854

WI67_27890

0.845

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_963	WI67_27890	DM42_963	DM42_5996	Asp_carb_tr- aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family	Asp_carb_tr- aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family	0.800
DM42_963	argF	DM42_963	DM42_2515	Asp_carb_tr- aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	0.854
DM42_963	argG	DM42_963	DM42_4341	Asp_carb_tr- aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family	argG- argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily	0.922
DM42_963	carA	DM42_963	DM42_431	Asp_carb_tr- aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family	CPSaseIIsmall- carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family	0.995
DM42_963	carB	DM42_963	DM42_429	Asp_carb_tr- aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family	CPSaseII_lrg- carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family	0.995
WI67_10330	WL94_36985	DM42_3152	DM42_7167	acOrn-deacetyl- acetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily	acOrn-deacetyl- acetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily	0.813
WI67_10330	argA	DM42_3152	DM42_2931	acOrn-deacetyl- acetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily	N-Ac-Glu-synth- amino-acid N-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily	0.452
WI67_10330	argB	DM42_3152	DM42_1916	acOrn-deacetyl- acetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl- L-glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily	0.533
WI67_10330	argF	DM42_3152	DM42_2515	acOrn-deacetyl- acetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	0.937
WI67_10330	argG	DM42_3152	DM42_4341	acOrn-deacetyl- acetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily	argG- argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily	0.959
WI67_10330	argJ	DM42_3152	DM42_1270	acOrn-deacetyl- acetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily	Arginine biosynthesis bifunctional protein ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis- the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate; Belongs to the ArgJ family	0.816
WI67_27890	DM42_963	DM42_5996	DM42_963	Asp_carb_tr- aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family	Asp_carb_tr- aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family	0.800
WI67_27890	argF	DM42_5996	DM42_2515	Asp_carb_tr- aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	0.845
WI67_27890	argG	DM42_5996	DM42_4341	Asp_carb_tr- aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family	argG- argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily	0.922
WI67_27890	carA	DM42_5996	DM42_431	Asp_carb_tr- aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family	CPSaseIIsmall- carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family	0.997
WI67_27890	carB	DM42_5996	DM42_429	Asp_carb_tr- aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family	CPSaseII_lrg- carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family	0.997
WL94_36985	WI67_10330	DM42_7167	DM42_3152	acOrn-deacetyl- acetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily	acOrn-deacetyl- acetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily	0.813
WL94_36985	argA	DM42_7167	DM42_2931	acOrn-deacetyl- acetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily	N-Ac-Glu-synth- amino-acid N-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily	0.452
WL94_36985	argB	DM42_7167	DM42_1916	acOrn-deacetyl- acetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily	Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl- L-glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily	0.533
WL94_36985	argF	DM42_7167	DM42_2515	acOrn-deacetyl- acetylornithine deacetylase; Belongs to the peptidase M20A family. ArgE subfamily	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline	0.937

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About