STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_253Hypothetical protein; DUF1656 domain-containing protein (67 aa)    
Predicted Functional Partners:
fusB
Aluminum activated malate transporter family protein; Involved in the resistance (detoxification) of the fungal toxin fusaric acid
 
   
 0.970
yiaV_1
Efflux transporter, rnd family, mfp subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
     0.929
DM42_251
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein
 
   
 0.924
DM42_3633
annotation not available
 
   
 0.811
DM42_250
Bacterial regulatory helix-turn-helix , lysr family protein; Belongs to the LysR transcriptional regulatory family
 
     0.669
dsbB
Disulfide bond formation dsbb family protein; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein (By similarity). Required for the production of extracellular protease
  
     0.613
DM42_1215
annotation not available
  
   
 0.548
psiF
annotation not available
  
     0.545
DM42_2699
Conserved hypothetical protein
  
     0.525
DM42_999
annotation not available
  
     0.514
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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