STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yiaV_1Efflux transporter, rnd family, mfp subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (291 aa)    
Predicted Functional Partners:
fusB
Aluminum activated malate transporter family protein; Involved in the resistance (detoxification) of the fungal toxin fusaric acid
 
 0.973
DM42_251
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein
 
 
 0.933
DM42_253
Hypothetical protein; DUF1656 domain-containing protein
 
     0.929
DM42_3633
annotation not available
 
 0.857
DM42_6192
annotation not available
 
 0.804
DM42_7420
annotation not available
 
 0.741
DM42_192
MarR family transcriptional regulator; outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein
 
 
 0.577
DM42_250
Bacterial regulatory helix-turn-helix , lysr family protein; Belongs to the LysR transcriptional regulatory family
 
     0.545
DM42_7421
annotation not available
 
 
 
 0.495
DM42_5655
outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein
 
 
 0.491
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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