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ribF protein (Burkholderia cepacia) - STRING interaction network
ribF: riboflavin biosynthesis protein RibF in Burkholderia cepacia
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
ribFribF- riboflavin biosynthesis protein RibF; Belongs to the ribF family (330 aa)    
Predicted Functional Partners:
ileS
Isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile) (945 aa)
 
   
  0.952
DM42_882
ribE- riboflavin synthase, alpha subunit (209 aa)
 
  0.950
WI67_21175
ribE- riboflavin synthase, alpha subunit (237 aa)
 
  0.946
msuE
FMN_reduc_MsuE- FMN reductase (186 aa)
   
 
  0.911
WI67_30095
annotation not available (216 aa)
       
  0.909
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (373 aa)
 
   
  0.908
DM42_4499
HAD-SF-IA-v1- HAD hydrolase, IA, variant 1 family protein (240 aa)
   
 
    0.905
hpaC
FMN reductase; hpaC- 4-hydroxyphenylacetate 3-monooxygenase, reductase component (181 aa)
       
    0.903
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (310 aa)
 
   
  0.861
cmk
Cmk- cytidylate kinase; Belongs to the cytidylate kinase family. Type 1 subfamily (228 aa)
        0.843
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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