STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_2571Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family (389 aa)    
Predicted Functional Partners:
DM42_2572
annotation not available
 
 0.995
DM42_2573
annotation not available
 
 0.994
DM42_2570
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family
 
0.991
livG
annotation not available
 
 0.979
livF
annotation not available
 
 0.975
DM42_4478
annotation not available
 
 0.973
DM42_4477
annotation not available
 
 0.972
livF_7
annotation not available
 
 0.971
DM42_286
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family
 
 0.965
braC_7
annotation not available
 
 0.961
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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