WL94_04350 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_04350

annotation not available (304 aa)

Predicted Functional Partners:

lgt

0.703

WL94_04345

0.634

WL94_02880

0.548

WL94_28690

0.501

DM42_5748

0.447

WI67_21455

0.445

WL94_25435

0.426

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_5748	WL94_04350	DM42_5748	DM42_2607	annotation not available	annotation not available	0.447
DM42_5748	WL94_25435	DM42_5748	DM42_2181	annotation not available	annotation not available	0.486
WI67_21455	WL94_04350	DM42_4201	DM42_2607	annotation not available	annotation not available	0.445
WI67_21455	WL94_25435	DM42_4201	DM42_2181	annotation not available	annotation not available	0.429
WL94_02880	WL94_04350	DM42_1519	DM42_2607	annotation not available	annotation not available	0.548
WL94_02880	WL94_25435	DM42_1519	DM42_2181	annotation not available	annotation not available	0.437
WL94_02880	WL94_28690	DM42_1519	DM42_106	annotation not available	annotation not available	0.566
WL94_04345	WL94_04350	DM42_2606	DM42_2607	ilvD- dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family	annotation not available	0.634
WL94_04345	lgt	DM42_2606	DM42_2608	ilvD- dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family	Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	0.493
WL94_04350	DM42_5748	DM42_2607	DM42_5748	annotation not available	annotation not available	0.447
WL94_04350	WI67_21455	DM42_2607	DM42_4201	annotation not available	annotation not available	0.445
WL94_04350	WL94_02880	DM42_2607	DM42_1519	annotation not available	annotation not available	0.548
WL94_04350	WL94_04345	DM42_2607	DM42_2606	annotation not available	ilvD- dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family	0.634
WL94_04350	WL94_25435	DM42_2607	DM42_2181	annotation not available	annotation not available	0.426
WL94_04350	WL94_28690	DM42_2607	DM42_106	annotation not available	annotation not available	0.501
WL94_04350	lgt	DM42_2607	DM42_2608	annotation not available	Prolipoprotein diacylglyceryl transferase; Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins	0.703
WL94_25435	DM42_5748	DM42_2181	DM42_5748	annotation not available	annotation not available	0.486
WL94_25435	WI67_21455	DM42_2181	DM42_4201	annotation not available	annotation not available	0.429
WL94_25435	WL94_02880	DM42_2181	DM42_1519	annotation not available	annotation not available	0.437
WL94_25435	WL94_04350	DM42_2181	DM42_2607	annotation not available	annotation not available	0.426

page 1 of 2

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2019

Credits

Access

Info

About