STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sodCannotation not available (178 aa)    
Predicted Functional Partners:
DM42_1766
Catalase family protein; Has an organic peroxide-dependent peroxidase activity
  
 0.962
katG
Catalase/peroxidase hpi; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity
   
 
 0.961
katE
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide
 
 0.926
DM42_2525
Iron/manganese superoxide dismutase, alpha-hairpin domain protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems
   
 0.733
DM42_6500
annotation not available
   
 0.733
DM42_4155
annotation not available
  
 0.639
DM42_6472
annotation not available
  
 0.639
otsB
Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose
  
  
 0.623
tal
Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
  
 
 0.615
DM42_2020
annotation not available
   
 0.608
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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