STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WI67_12755dGTP triphosphohydrolase; GGDEF: diguanylate cyclase domain protein (779 aa)    
Predicted Functional Partners:
WL94_39365
annotation not available
 
 
 
 0.707
WL94_28650
GGDEF: diguanylate cyclase domain protein
 
 
0.648
WI67_32310
annotation not available
 
 
0.607
WI67_10100
GGDEF: diguanylate cyclase domain protein
 
0.605
WL94_32085
GGDEF: diguanylate cyclase domain protein
 
 
0.593
DM42_4339
GGDEF: diguanylate cyclase domain protein
 
 
 
0.584
DM42_578
GGDEF: diguanylate cyclase domain protein
 
 
 
0.582
WL94_00960
GGDEF: diguanylate cyclase domain protein
 
 
 
0.581
DM42_6892
GGDEF: diguanylate cyclase domain protein
 
 
 
0.580
DM42_6287
GGDEF: diguanylate cyclase domain protein
 
 
0.562
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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