Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DM42_2228 | phaZ | DM42_2228 | DM42_2734 | Hypothetical protein; DUF2909 domain-containing protein | Esterase; PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein | 0.613 |
DM42_229 | DM42_4866 | DM42_229 | DM42_4866 | annotation not available | annotation not available | 0.682 |
DM42_229 | phaR | DM42_229 | DM42_3314 | annotation not available | PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR | 0.647 |
DM42_229 | phaZ | DM42_229 | DM42_2734 | annotation not available | Esterase; PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein | 0.495 |
DM42_229 | phbC | DM42_229 | DM42_3311 | annotation not available | annotation not available | 0.730 |
DM42_2735 | phaZ | DM42_2735 | DM42_2734 | annotation not available | Esterase; PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein | 0.460 |
DM42_4866 | DM42_229 | DM42_4866 | DM42_229 | annotation not available | annotation not available | 0.682 |
DM42_4866 | PhbB-1 | DM42_4866 | DM42_2299 | annotation not available | annotation not available | 0.949 |
DM42_4866 | phaR | DM42_4866 | DM42_3314 | annotation not available | PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR | 0.755 |
DM42_4866 | phaZ | DM42_4866 | DM42_2734 | annotation not available | Esterase; PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein | 0.951 |
DM42_4866 | phbB-1 | DM42_4866 | DM42_3313 | annotation not available | Acetoacetyl-coa reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family | 0.938 |
DM42_4866 | phbC | DM42_4866 | DM42_3311 | annotation not available | annotation not available | 0.851 |
DM42_7014 | phaZ | DM42_7014 | DM42_2734 | Hypothetical protein; DUF2909 domain-containing protein | Esterase; PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein | 0.507 |
PhbB-1 | DM42_4866 | DM42_2299 | DM42_4866 | annotation not available | annotation not available | 0.949 |
PhbB-1 | phaR | DM42_2299 | DM42_3314 | annotation not available | PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR | 0.648 |
PhbB-1 | phaZ | DM42_2299 | DM42_2734 | annotation not available | Esterase; PHB_depoly_PhaZ: polyhydroxyalkanoate depolymerase, intracellular family protein | 0.705 |
PhbB-1 | phbB-1 | DM42_2299 | DM42_3313 | annotation not available | Acetoacetyl-coa reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family | 0.807 |
PhbB-1 | phbC | DM42_2299 | DM42_3311 | annotation not available | annotation not available | 0.955 |
phaR | DM42_229 | DM42_3314 | DM42_229 | PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR | annotation not available | 0.647 |
phaR | DM42_4866 | DM42_3314 | DM42_4866 | PHA_reg_PhaR: polyhydroxyalkanoate synthesis repressor PhaR | annotation not available | 0.755 |
page 1 of 3