Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DM42_2742 | DM42_4362 | DM42_2742 | DM42_4362 | Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family | annotation not available | 0.769 |
DM42_2742 | DM42_5174 | DM42_2742 | DM42_5174 | Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family | annotation not available | 0.822 |
DM42_2742 | DM42_5776 | DM42_2742 | DM42_5776 | Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family | annotation not available | 0.994 |
DM42_2742 | fusA | DM42_2742 | DM42_1476 | Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family | Translation elongation factor g; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome | 0.733 |
DM42_2742 | hrpA | DM42_2742 | DM42_2932 | Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family | DEAH_box_HrpA: ATP-dependent helicase HrpA | 0.851 |
DM42_2742 | ksgA | DM42_2742 | DM42_2364 | Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits | 0.741 |
DM42_2742 | rhlE | DM42_2742 | DM42_2400 | Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family | Atp-dependent rna helicase rhle; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA | 0.815 |
DM42_2742 | rlmE | DM42_2742 | DM42_425 | Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family | 23S rRNA (uridine2552-2'-O)-methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit | 0.799 |
DM42_2742 | rnc | DM42_2742 | DM42_692 | Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family | Ribonuclease iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism | 0.813 |
DM42_2742 | rpsA | DM42_2742 | DM42_780 | Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family | Small subunit ribosomal protein s1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence | 0.753 |
DM42_4362 | DM42_2742 | DM42_4362 | DM42_2742 | annotation not available | Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family | 0.769 |
DM42_4362 | DM42_5174 | DM42_4362 | DM42_5174 | annotation not available | annotation not available | 0.769 |
DM42_4362 | rhlE | DM42_4362 | DM42_2400 | annotation not available | Atp-dependent rna helicase rhle; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA | 0.769 |
DM42_5174 | DM42_2742 | DM42_5174 | DM42_2742 | annotation not available | Atp-dependent rna helicase rhle; Belongs to the DEAD box helicase family | 0.822 |
DM42_5174 | DM42_4362 | DM42_5174 | DM42_4362 | annotation not available | annotation not available | 0.769 |
DM42_5174 | DM42_5776 | DM42_5174 | DM42_5776 | annotation not available | annotation not available | 0.994 |
DM42_5174 | fusA | DM42_5174 | DM42_1476 | annotation not available | Translation elongation factor g; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome | 0.733 |
DM42_5174 | hrpA | DM42_5174 | DM42_2932 | annotation not available | DEAH_box_HrpA: ATP-dependent helicase HrpA | 0.830 |
DM42_5174 | ksgA | DM42_5174 | DM42_2364 | annotation not available | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits | 0.743 |
DM42_5174 | rhlE | DM42_5174 | DM42_2400 | annotation not available | Atp-dependent rna helicase rhle; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA | 0.815 |
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