STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cueRMerr family transcriptional regulator, copper efflux regulator; cueR: Cu(I)-responsive transcriptional regulator (134 aa)    
Predicted Functional Partners:
merP
merP: mercuric transport protein periplasmic component
 
  
 0.736
DM42_4600
ATPase-IB1_Cu: copper-translocating P-type ATPase
   
 0.613
DM42_3270
annotation not available
  
     0.595
DM42_3836
annotation not available
  
   
 0.577
DM42_5294
ATPase-IB1_Cu: copper-translocating P-type ATPase
   
 0.553
soxR
Merr family transcriptional regulator, redox-sensitive transcriptional activator soxr; soxR: redox-sensitive transcriptional activator SoxR
  
   
 0.529
DM42_605
annotation not available
 
  
 0.528
DM42_2020
annotation not available
 
  
 0.516
recG
Atp-dependent dna helicase recg; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA)
      
 0.511
dsbB
Disulfide bond formation dsbb family protein; Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein (By similarity). Required for the production of extracellular protease
      
 0.499
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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