WL94_19630 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WL94_19630

Uncharacterized protein; Na_symport_sm- putative solute-sodium symporter small subunit domain protein (114 aa)

Predicted Functional Partners:

WL94_19635

0.960

DM42_2875

0.622

WL94_04630

0.525

WI67_04835

0.495

WL94_15225

0.485

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_2875	WL94_19630	DM42_2875	DM42_2876	ac_CoA_lig_AcsA- acetate--CoA ligase	Uncharacterized protein; Na_symport_sm- putative solute-sodium symporter small subunit domain protein	0.622
DM42_2875	WL94_19635	DM42_2875	DM42_2877	ac_CoA_lig_AcsA- acetate--CoA ligase	Cation acetate symporter; Na_symport_lg- putative sodium-solute symporter, VC_2705 subfamily protein; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family	0.713
WI67_04835	WL94_04630	DM42_827	DM42_6147	Dnaq- exonuclease, DNA polymerase III, epsilon subunit family domain protein	Nuclease; Part of AAA domain protein	0.518
WI67_04835	WL94_19630	DM42_827	DM42_2876	Dnaq- exonuclease, DNA polymerase III, epsilon subunit family domain protein	Uncharacterized protein; Na_symport_sm- putative solute-sodium symporter small subunit domain protein	0.495
WL94_04630	WI67_04835	DM42_6147	DM42_827	Nuclease; Part of AAA domain protein	Dnaq- exonuclease, DNA polymerase III, epsilon subunit family domain protein	0.518
WL94_04630	WL94_19630	DM42_6147	DM42_2876	Nuclease; Part of AAA domain protein	Uncharacterized protein; Na_symport_sm- putative solute-sodium symporter small subunit domain protein	0.525
WL94_15225	WL94_19630	DM42_2418	DM42_2876	annotation not available	Uncharacterized protein; Na_symport_sm- putative solute-sodium symporter small subunit domain protein	0.485
WL94_19630	DM42_2875	DM42_2876	DM42_2875	Uncharacterized protein; Na_symport_sm- putative solute-sodium symporter small subunit domain protein	ac_CoA_lig_AcsA- acetate--CoA ligase	0.622
WL94_19630	WI67_04835	DM42_2876	DM42_827	Uncharacterized protein; Na_symport_sm- putative solute-sodium symporter small subunit domain protein	Dnaq- exonuclease, DNA polymerase III, epsilon subunit family domain protein	0.495
WL94_19630	WL94_04630	DM42_2876	DM42_6147	Uncharacterized protein; Na_symport_sm- putative solute-sodium symporter small subunit domain protein	Nuclease; Part of AAA domain protein	0.525
WL94_19630	WL94_15225	DM42_2876	DM42_2418	Uncharacterized protein; Na_symport_sm- putative solute-sodium symporter small subunit domain protein	annotation not available	0.485
WL94_19630	WL94_19635	DM42_2876	DM42_2877	Uncharacterized protein; Na_symport_sm- putative solute-sodium symporter small subunit domain protein	Cation acetate symporter; Na_symport_lg- putative sodium-solute symporter, VC_2705 subfamily protein; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family	0.960
WL94_19635	DM42_2875	DM42_2877	DM42_2875	Cation acetate symporter; Na_symport_lg- putative sodium-solute symporter, VC_2705 subfamily protein; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family	ac_CoA_lig_AcsA- acetate--CoA ligase	0.713
WL94_19635	WL94_19630	DM42_2877	DM42_2876	Cation acetate symporter; Na_symport_lg- putative sodium-solute symporter, VC_2705 subfamily protein; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family	Uncharacterized protein; Na_symport_sm- putative solute-sodium symporter small subunit domain protein	0.960

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Coexpression

Databases

Fusion

© STRING Consortium 2019

Credits

Access

Info

About