Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
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Fusion
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WL94_19700
annotation not available (345 aa)
Predicted Functional Partners:
WL94_19695
annotation not available
0.694
WL94_20520
annotation not available
0.477
WL94_26045
annotation not available
0.473
WL94_03470
annotation not available
0.464
WI67_21070
annotation not available
0.424
WL94_27065
annotation not available
0.419
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
node1
node2
node1 accession
node2 accession
node1 annotation
node2 annotation
score
WI67_21070
WI67_25425
DM42_4277
DM42_6264
annotation not available
annotation not available
0.716
WI67_21070
WL94_19700
DM42_4277
DM42_2896
annotation not available
annotation not available
0.424
WI67_25425
WI67_21070
DM42_6264
DM42_4277
annotation not available
annotation not available
0.716
WI67_25425
WL94_19700
DM42_6264
DM42_2896
annotation not available
annotation not available
0.404
WI67_25425
rpoA
DM42_6264
DM42_1447
annotation not available
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
0.415
WL94_03470
WL94_19700
DM42_1661
DM42_2896
annotation not available
annotation not available
0.464
WL94_19695
WL94_19700
DM42_2895
DM42_2896
annotation not available
annotation not available
0.694
WL94_19700
WI67_21070
DM42_2896
DM42_4277
annotation not available
annotation not available
0.424
WL94_19700
WI67_25425
DM42_2896
DM42_6264
annotation not available
annotation not available
0.404
WL94_19700
WL94_03470
DM42_2896
DM42_1661
annotation not available
annotation not available
0.464
WL94_19700
WL94_19695
DM42_2896
DM42_2895
annotation not available
annotation not available
0.694
WL94_19700
WL94_20520
DM42_2896
DM42_859
annotation not available
annotation not available
0.477
WL94_19700
WL94_26045
DM42_2896
DM42_4389
annotation not available
annotation not available
0.473
WL94_19700
WL94_27065
DM42_2896
DM42_4252
annotation not available
annotation not available
0.419
WL94_19700
rpoA
DM42_2896
DM42_1447
annotation not available
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
0.415
WL94_20520
WL94_19700
DM42_859
DM42_2896
annotation not available
annotation not available
0.477
WL94_20520
WL94_26045
DM42_859
DM42_4389
annotation not available
annotation not available
0.589
WL94_26045
WL94_19700
DM42_4389
DM42_2896
annotation not available
annotation not available
0.473
WL94_26045
WL94_20520
DM42_4389
DM42_859
annotation not available
annotation not available
0.589
WL94_27065
WL94_19700
DM42_4252
DM42_2896
annotation not available
annotation not available
0.419
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Network Stats
Network Stats analysis is still ongoing, please wait ...
Functional enrichments in your networkNote: some enrichments may be expected here (why?) explain columns
Enrichment analysis is still ongoing, please wait ...
Statistical background
For the above enrichment analysis, the following statistical background is assumed: