STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_2936annotation not available (271 aa)    
Predicted Functional Partners:
DM42_2935
annotation not available
 
     0.912
ygaD
Nicotinamide-nucleotide amidase; Belongs to the CinA family
   
 0.774
DM42_2934
annotation not available
 
     0.743
DM42_2933
annotation not available
 
     0.731
recA
Recombination protein reca; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
     
 0.711
DM42_2337
Hypothetical protein; FAD linked oxidase, C-terminal domain protein
 
     0.687
DM42_915
annotation not available
      0.665
DM42_2977
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2
   
  
 0.662
polA
In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
     
 0.627
DM42_2729
Hypothetical protein; Uncharacterized protein
  
     0.609
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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