Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
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Fusion
Genes that are sometimes fused into single open reading frames.
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Textmining
Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
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Coexpression
Proteins whose genes are observed to be correlated in expression, across a large number of experiments.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WL94_39670
Uncharacterized protein (271 aa)
Predicted Functional Partners:
WL94_39680
33 kDa chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
node1
node2
node1 accession
node2 accession
node1 annotation
node2 annotation
score
VL15_01145
WL94_31650
DM42_2437
DM42_3244
annotation not available
Uncharacterized protein
0.652
VL15_01145
WL94_39670
DM42_2437
DM42_2986
annotation not available
Uncharacterized protein
0.401
WI67_11400
WL94_39670
DM42_2985
DM42_2986
annotation not available
Uncharacterized protein
0.601
WI67_11400
WL94_39680
DM42_2985
DM42_2984
annotation not available
33 kDa chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
0.801
WL94_31650
VL15_01145
DM42_3244
DM42_2437
Uncharacterized protein
annotation not available
0.652
WL94_31650
WL94_39670
DM42_3244
DM42_2986
Uncharacterized protein
Uncharacterized protein
0.403
WL94_39665
WL94_39670
DM42_2987
DM42_2986
annotation not available
Uncharacterized protein
0.512
WL94_39670
VL15_01145
DM42_2986
DM42_2437
Uncharacterized protein
annotation not available
0.401
WL94_39670
WI67_11400
DM42_2986
DM42_2985
Uncharacterized protein
annotation not available
0.601
WL94_39670
WL94_31650
DM42_2986
DM42_3244
Uncharacterized protein
Uncharacterized protein
0.403
WL94_39670
WL94_39665
DM42_2986
DM42_2987
Uncharacterized protein
annotation not available
0.512
WL94_39670
WL94_39680
DM42_2986
DM42_2984
Uncharacterized protein
33 kDa chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
0.656
WL94_39680
WI67_11400
DM42_2984
DM42_2985
33 kDa chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
annotation not available
0.801
WL94_39680
WL94_39670
DM42_2984
DM42_2986
33 kDa chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
Uncharacterized protein
0.656
Network Stats
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Functional enrichments in your networkNote: some enrichments may be expected here (why?) explain columns
Enrichment analysis is still ongoing, please wait ...
Statistical background
For the above enrichment analysis, the following statistical background is assumed: