STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_2990annotation not available (220 aa)    
Predicted Functional Partners:
trpS
Tryptophanyl-trna synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp)
       0.891
DM42_2992
annotation not available
 
     0.873
yciO
Trna threonylcarbamoyl adenosine modification protein, sua5/ycio/yrdc/ywlc family; Belongs to the SUA5 family
       0.792
DM42_2988
annotation not available
 
     0.724
dapA_5
4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA)
       0.721
DM42_2994
annotation not available
       0.508
ispZ
Intracellular septation protein a; Involved in cell division; probably involved in intracellular septation
 
     0.478
DM42_2995
annotation not available
       0.474
coaX
Pantothenate kinase, type iii family protein; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
 
     0.467
DM42_202
Pseudouridine synthase family protein; Belongs to the pseudouridine synthase RsuA family
  
    0.401
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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