DM42_3029 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

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Cooccurence

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[Homology]

Score

DM42_3029

annotation not available (118 aa)

Predicted Functional Partners:

DM42_3108

0.766

DM42_1720

0.762

DM42_3463

0.748

DM42_5350

0.747

DM42_5095

0.743

DM42_3407

0.742

DM42_5140

0.740

DM42_4187

0.739

DM42_3780

0.735

DM42_2841

0.733

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DM42_1720	DM42_2841	annotation not available	Hypothetical protein; Uncharacterized protein	0.766
DM42_1720	DM42_3029	annotation not available	annotation not available	0.762
DM42_1720	DM42_3108	annotation not available	annotation not available	0.776
DM42_1720	DM42_3407	annotation not available	Hypothetical protein; Uncharacterized protein	0.755
DM42_1720	DM42_3463	annotation not available	annotation not available	0.727
DM42_1720	DM42_3780	annotation not available	Hypothetical protein; Uncharacterized protein	0.690
DM42_1720	DM42_4187	annotation not available	Hypothetical protein; Uncharacterized protein	0.768
DM42_1720	DM42_5095	annotation not available	Hypothetical protein; Uncharacterized protein	0.616
DM42_1720	DM42_5140	annotation not available	Phage integrase family protein; Belongs to the 'phage' integrase family	0.768
DM42_1720	DM42_5350	annotation not available	Hypothetical protein; Uncharacterized protein	0.638
DM42_2841	DM42_1720	Hypothetical protein; Uncharacterized protein	annotation not available	0.766
DM42_2841	DM42_3029	Hypothetical protein; Uncharacterized protein	annotation not available	0.733
DM42_2841	DM42_3108	Hypothetical protein; Uncharacterized protein	annotation not available	0.775
DM42_2841	DM42_3407	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.699
DM42_2841	DM42_3463	Hypothetical protein; Uncharacterized protein	annotation not available	0.522
DM42_2841	DM42_3780	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.436
DM42_2841	DM42_4187	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.784
DM42_2841	DM42_5095	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.732
DM42_2841	DM42_5140	Hypothetical protein; Uncharacterized protein	Phage integrase family protein; Belongs to the 'phage' integrase family	0.654
DM42_2841	DM42_5350	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.744

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