WL94_39480 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

WL94_39480

annotation not available (365 aa)

Predicted Functional Partners:

WL94_39475

0.978

WL94_39485

0.974

WL94_39490

0.921

WL94_29685

0.918

WL94_29675

0.862

DM42_3479

0.821

DM42_7013

0.815

WL94_29680

0.804

WL94_12680

0.769

oppB

0.722

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_3479	DM42_7013	DM42_3479	DM42_7013	annotation not available	nickel_nikE- nickel import ATP-binding protein NikE	0.459
DM42_3479	WL94_29675	DM42_3479	DM42_3482	annotation not available	Microcin ABC transporter ATP-binding protein; nickel_nikE- nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily	0.938
DM42_3479	WL94_29680	DM42_3479	DM42_3481	annotation not available	annotation not available	0.966
DM42_3479	WL94_29685	DM42_3479	DM42_3480	annotation not available	annotation not available	0.968
DM42_3479	WL94_39475	DM42_3479	DM42_3033	annotation not available	Microcin ABC transporter ATP-binding protein; nickel_nikE- nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily	0.696
DM42_3479	WL94_39480	DM42_3479	DM42_3032	annotation not available	annotation not available	0.821
DM42_3479	WL94_39485	DM42_3479	DM42_3031	annotation not available	annotation not available	0.828
DM42_3479	WL94_39490	DM42_3479	DM42_3030	annotation not available	annotation not available	0.808
DM42_3479	oppB	DM42_3479	DM42_5257	annotation not available	annotation not available	0.425
DM42_7013	DM42_3479	DM42_7013	DM42_3479	nickel_nikE- nickel import ATP-binding protein NikE	annotation not available	0.459
DM42_7013	WL94_29680	DM42_7013	DM42_3481	nickel_nikE- nickel import ATP-binding protein NikE	annotation not available	0.822
DM42_7013	WL94_29685	DM42_7013	DM42_3480	nickel_nikE- nickel import ATP-binding protein NikE	annotation not available	0.804
DM42_7013	WL94_39480	DM42_7013	DM42_3032	nickel_nikE- nickel import ATP-binding protein NikE	annotation not available	0.815
DM42_7013	WL94_39485	DM42_7013	DM42_3031	nickel_nikE- nickel import ATP-binding protein NikE	annotation not available	0.790
DM42_7013	WL94_39490	DM42_7013	DM42_3030	nickel_nikE- nickel import ATP-binding protein NikE	annotation not available	0.440
DM42_7013	oppB	DM42_7013	DM42_5257	nickel_nikE- nickel import ATP-binding protein NikE	annotation not available	0.750
WL94_12680	WL94_29680	DM42_3800	DM42_3481	Glutathione ABC transporter ATP-binding protein; nickel_nikE- nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily	annotation not available	0.777
WL94_12680	WL94_29685	DM42_3800	DM42_3480	Glutathione ABC transporter ATP-binding protein; nickel_nikE- nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily	annotation not available	0.757
WL94_12680	WL94_39480	DM42_3800	DM42_3032	Glutathione ABC transporter ATP-binding protein; nickel_nikE- nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily	annotation not available	0.769
WL94_12680	WL94_39485	DM42_3800	DM42_3031	Glutathione ABC transporter ATP-binding protein; nickel_nikE- nickel import ATP-binding protein NikE; Belongs to the ABC transporter superfamily	annotation not available	0.743

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