STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yeaZtRNA threonylcarbamoyladenosine biosynthesis protein TsaB; T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ (252 aa)    
Predicted Functional Partners:
tsaD
Trna threonylcarbamoyl adenosine modification protein ygjd; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
 
 
 0.998
rimI
[ribosomal protein s18]-alanine n-acetyltransferase; rimI: ribosomal-protein-alanine acetyltransferase
 
 0.977
tsaE
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE
 
 
 0.908
DM42_3056
UDG_fam4: uracil-DNA glycosylase, 4 family protein
  
    0.895
DM42_3057
Uncharacterized protein
       0.893
DM42_3184
annotation not available
  
  
 0.639
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate
 
    0.627
DM42_2977
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2
 
     0.603
trmU
Trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
 
  
 0.594
DM42_1539
Putative endonuclease; Belongs to the UPF0102 family
 
    0.577
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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