STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3057Uncharacterized protein (321 aa)    
Predicted Functional Partners:
rimI
[ribosomal protein s18]-alanine n-acetyltransferase; rimI: ribosomal-protein-alanine acetyltransferase
  
    0.897
yeaZ
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB; T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ
       0.893
DM42_3056
UDG_fam4: uracil-DNA glycosylase, 4 family protein
  
    0.886
DM42_2977
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2
   
    0.622
DM42_3053
annotation not available
       0.564
DM42_405
Hypothetical protein; Uncharacterized protein
  
     0.547
DM42_3574
Vrr-nuc domain protein; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions
 
     0.485
DM42_2650
annotation not available
  
     0.484
DM42_848
Periplasmic protein tonb; tonB_Cterm: TonB family C-terminal domain protein
  
     0.423
DM42_6203
annotation not available
  
     0.422
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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