Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DM42_3073 | dapC | DM42_3073 | DM42_3070 | Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins | N-succinyldiaminopimelate aminotransferase; dapC_gpp: succinyldiaminopimelate transaminase | 0.510 |
| DM42_3073 | def | DM42_3073 | DM42_3075 | Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions | 0.672 |
| DM42_3073 | ligA | DM42_3073 | DM42_3074 | Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins | Dna ligase, nad-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA | 0.717 |
| DM42_3073 | smc | DM42_3073 | DM42_3072 | Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins | Chromosome segregation protein smc; Required for chromosome condensation and partitioning | 0.794 |
| DM42_3337 | DM42_7379 | DM42_3337 | DM42_7379 | annotation not available | annotation not available | 0.978 |
| DM42_3337 | smc | DM42_3337 | DM42_3072 | annotation not available | Chromosome segregation protein smc; Required for chromosome condensation and partitioning | 0.653 |
| DM42_633 | DM42_7379 | DM42_633 | DM42_7379 | Hypothetical protein; recF/RecN/SMC N terminal domain protein | annotation not available | 0.978 |
| DM42_633 | smc | DM42_633 | DM42_3072 | Hypothetical protein; recF/RecN/SMC N terminal domain protein | Chromosome segregation protein smc; Required for chromosome condensation and partitioning | 0.653 |
| DM42_7378 | DM42_7379 | DM42_7378 | DM42_7379 | annotation not available | annotation not available | 0.999 |
| DM42_7378 | smc | DM42_7378 | DM42_3072 | annotation not available | Chromosome segregation protein smc; Required for chromosome condensation and partitioning | 0.683 |
| DM42_7379 | DM42_3337 | DM42_7379 | DM42_3337 | annotation not available | annotation not available | 0.978 |
| DM42_7379 | DM42_633 | DM42_7379 | DM42_633 | annotation not available | Hypothetical protein; recF/RecN/SMC N terminal domain protein | 0.978 |
| DM42_7379 | DM42_7378 | DM42_7379 | DM42_7378 | annotation not available | annotation not available | 0.999 |
| DM42_7379 | ligA | DM42_7379 | DM42_3074 | annotation not available | Dna ligase, nad-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA | 0.502 |
| DM42_7379 | smc | DM42_7379 | DM42_3072 | annotation not available | Chromosome segregation protein smc; Required for chromosome condensation and partitioning | 0.590 |
| dapC | DM42_3073 | DM42_3070 | DM42_3073 | N-succinyldiaminopimelate aminotransferase; dapC_gpp: succinyldiaminopimelate transaminase | Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins | 0.510 |
| dapC | smc | DM42_3070 | DM42_3072 | N-succinyldiaminopimelate aminotransferase; dapC_gpp: succinyldiaminopimelate transaminase | Chromosome segregation protein smc; Required for chromosome condensation and partitioning | 0.575 |
| def | DM42_3073 | DM42_3075 | DM42_3073 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions | Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins | 0.672 |
| def | ligA | DM42_3075 | DM42_3074 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions | Dna ligase, nad-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA | 0.893 |
| def | smc | DM42_3075 | DM42_3072 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions | Chromosome segregation protein smc; Required for chromosome condensation and partitioning | 0.598 |
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