STRINGSTRING
DM42_3116 protein (Burkholderia cepacia) - STRING interaction network
"DM42_3116" - annotation not available in Burkholderia cepacia
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3116annotation not available (331 aa)    
Predicted Functional Partners:
DM42_3115
Conserved hypothetical protein (92 aa)
 
          0.972
DM42_3119
annotation not available (468 aa)
 
          0.922
DM42_3118
annotation not available (291 aa)
 
          0.914
WI67_10495
annotation not available (81 aa)
 
          0.911
WL94_31035
annotation not available (579 aa)
 
          0.907
WL94_31040
annotation not available (256 aa)
 
          0.869
DM42_3117
annotation not available (262 aa)
 
          0.868
DM42_5717
Conserved hypothetical protein (165 aa)
     
        0.760
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (275 aa)
   
   
  0.712
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP (539 aa)
   
        0.711
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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