WI67_10475 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

WI67_10475

Uncharacterized protein (133 aa)

Predicted Functional Partners:

tadA

0.585

WL94_20955

0.546

DM42_3212

0.525

WL94_17225

0.510

WI67_10370

0.506

WI67_10465

0.505

WL94_01100

0.503

WI67_31660

0.501

WI67_16890

0.499

WI67_07945

0.487

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_3212	WI67_07945	DM42_3212	DM42_98	Uncharacterized protein	Uncharacterized protein	0.784
DM42_3212	WI67_10370	DM42_3212	DM42_3145	Uncharacterized protein	Uncharacterized protein	0.784
DM42_3212	WI67_10475	DM42_3212	DM42_3124	Uncharacterized protein	Uncharacterized protein	0.525
DM42_3212	WI67_16890	DM42_3212	DM42_5142	Uncharacterized protein	annotation not available	0.783
DM42_3212	WI67_31660	DM42_3212	DM42_5275	Uncharacterized protein	Uncharacterized protein	0.784
DM42_3212	WL94_01100	DM42_3212	DM42_5139	Uncharacterized protein	Serine/threonine protein kinase	0.784
DM42_3212	WL94_17225	DM42_3212	DM42_561	Uncharacterized protein	Uncharacterized protein	0.784
DM42_3212	WL94_20955	DM42_3212	DM42_937	Uncharacterized protein	annotation not available	0.730
WI67_07945	DM42_3212	DM42_98	DM42_3212	Uncharacterized protein	Uncharacterized protein	0.784
WI67_07945	WI67_10370	DM42_98	DM42_3145	Uncharacterized protein	Uncharacterized protein	0.784
WI67_07945	WI67_10475	DM42_98	DM42_3124	Uncharacterized protein	Uncharacterized protein	0.487
WI67_07945	WI67_16890	DM42_98	DM42_5142	Uncharacterized protein	annotation not available	0.780
WI67_07945	WI67_31660	DM42_98	DM42_5275	Uncharacterized protein	Uncharacterized protein	0.784
WI67_07945	WL94_01100	DM42_98	DM42_5139	Uncharacterized protein	Serine/threonine protein kinase	0.784
WI67_07945	WL94_17225	DM42_98	DM42_561	Uncharacterized protein	Uncharacterized protein	0.784
WI67_07945	WL94_20955	DM42_98	DM42_937	Uncharacterized protein	annotation not available	0.718
WI67_10370	DM42_3212	DM42_3145	DM42_3212	Uncharacterized protein	Uncharacterized protein	0.784
WI67_10370	WI67_07945	DM42_3145	DM42_98	Uncharacterized protein	Uncharacterized protein	0.784
WI67_10370	WI67_10475	DM42_3145	DM42_3124	Uncharacterized protein	Uncharacterized protein	0.506
WI67_10370	WI67_16890	DM42_3145	DM42_5142	Uncharacterized protein	annotation not available	0.783

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About