DM42_3124 protein (Burkholderia cepacia) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DM42_3124

Hypothetical protein; Uncharacterized protein (133 aa)

Predicted Functional Partners:

tadA

0.585

DM42_937

0.546

DM42_3212

0.525

DM42_561

0.510

DM42_3145

0.506

ldcA

0.505

DM42_5139

0.503

DM42_5275

0.501

DM42_5142

0.499

DM42_98

0.487

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM42_3124	DM42_3145	DM42_3124	DM42_3145	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.506
DM42_3124	DM42_3212	DM42_3124	DM42_3212	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.525
DM42_3124	DM42_5139	DM42_3124	DM42_5139	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Serine/threonine protein kinase	0.503
DM42_3124	DM42_5142	DM42_3124	DM42_5142	Hypothetical protein; Uncharacterized protein	annotation not available	0.499
DM42_3124	DM42_5275	DM42_3124	DM42_5275	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.501
DM42_3124	DM42_561	DM42_3124	DM42_561	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.510
DM42_3124	DM42_937	DM42_3124	DM42_937	Hypothetical protein; Uncharacterized protein	annotation not available	0.546
DM42_3124	DM42_98	DM42_3124	DM42_98	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.487
DM42_3124	ldcA	DM42_3124	DM42_3126	Hypothetical protein; Uncharacterized protein	annotation not available	0.505
DM42_3124	tadA	DM42_3124	DM42_3125	Hypothetical protein; Uncharacterized protein	Cytidine and deoxycytidylate deaminase zinc-binding region family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2)	0.585
DM42_3145	DM42_3124	DM42_3145	DM42_3124	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.506
DM42_3145	DM42_3212	DM42_3145	DM42_3212	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.784
DM42_3145	DM42_5139	DM42_3145	DM42_5139	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Serine/threonine protein kinase	0.784
DM42_3145	DM42_5142	DM42_3145	DM42_5142	Hypothetical protein; Uncharacterized protein	annotation not available	0.783
DM42_3145	DM42_5275	DM42_3145	DM42_5275	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.784
DM42_3145	DM42_561	DM42_3145	DM42_561	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.785
DM42_3145	DM42_937	DM42_3145	DM42_937	Hypothetical protein; Uncharacterized protein	annotation not available	0.718
DM42_3145	DM42_98	DM42_3145	DM42_98	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.784
DM42_3212	DM42_3124	DM42_3212	DM42_3124	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.525
DM42_3212	DM42_3145	DM42_3212	DM42_3145	Hypothetical protein; Uncharacterized protein	Hypothetical protein; Uncharacterized protein	0.784

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2021

Credits

Access

Info

About