STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpnD15-cis-phytoene synthase; hpnD: squalene synthase HpnD (277 aa)    
Predicted Functional Partners:
DM42_4177
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family
  
 0.895
DM42_1259
Polyprenyl synthetase family protein; Belongs to the FPP/GGPP synthase family
  
 0.874
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
   
 0.824
HpnD
Presqualene diphosphate synthase; hpnD: squalene synthase HpnD
  
     0.708
DM42_5156
annotation not available
  
 0.694
DM42_246
Hypothetical protein; Uncharacterized protein
  
     0.611
DM42_2337
Hypothetical protein; FAD linked oxidase, C-terminal domain protein
 
    0.584
DM42_2994
annotation not available
  
     0.562
bamC
annotation not available
  
     0.558
DM42_1230
annotation not available
  
  
  0.528
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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