Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DM42_2603 | DM42_827 | DM42_2603 | DM42_827 | annotation not available | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | 0.961 |
| DM42_2603 | dnaE | DM42_2603 | DM42_2745 | annotation not available | Polc: DNA polymerase III, alpha subunit | 0.952 |
| DM42_2603 | dnaN | DM42_2603 | DM42_1785 | annotation not available | Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for proces [...] | 0.961 |
| DM42_2603 | dnaQ | DM42_2603 | DM42_437 | annotation not available | DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease | 0.966 |
| DM42_2603 | dnaX | DM42_2603 | DM42_3273 | annotation not available | dnaX_nterm: DNA polymerase III, subunit gamma and tau | 0.999 |
| DM42_2603 | holA | DM42_2603 | DM42_1187 | annotation not available | holA: DNA polymerase III, delta subunit | 0.997 |
| DM42_2603 | holB | DM42_2603 | DM42_3209 | annotation not available | holB: DNA polymerase III, delta' subunit | 0.999 |
| DM42_2603 | polC | DM42_2603 | DM42_3110 | annotation not available | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | 0.926 |
| DM42_827 | DM42_2603 | DM42_827 | DM42_2603 | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | annotation not available | 0.961 |
| DM42_827 | dinB | DM42_827 | DM42_2946 | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | Hypothetical protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII | 0.951 |
| DM42_827 | dnaE | DM42_827 | DM42_2745 | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | Polc: DNA polymerase III, alpha subunit | 0.998 |
| DM42_827 | dnaN | DM42_827 | DM42_1785 | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for proces [...] | 0.997 |
| DM42_827 | dnaQ | DM42_827 | DM42_437 | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease | 0.856 |
| DM42_827 | dnaX | DM42_827 | DM42_3273 | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | dnaX_nterm: DNA polymerase III, subunit gamma and tau | 0.997 |
| DM42_827 | holA | DM42_827 | DM42_1187 | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | holA: DNA polymerase III, delta subunit | 0.992 |
| DM42_827 | holB | DM42_827 | DM42_3209 | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | holB: DNA polymerase III, delta' subunit | 0.990 |
| DM42_827 | polC | DM42_827 | DM42_3110 | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | 0.873 |
| dinB | DM42_827 | DM42_2946 | DM42_827 | Hypothetical protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII | Dnaq: exonuclease, DNA polymerase III, epsilon subunit family domain protein | 0.951 |
| dinB | dnaE | DM42_2946 | DM42_2745 | Hypothetical protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII | Polc: DNA polymerase III, alpha subunit | 0.963 |
| dinB | dnaN | DM42_2946 | DM42_1785 | Hypothetical protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII | Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for proces [...] | 0.979 |
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