STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM42_3226annotation not available (298 aa)    
Predicted Functional Partners:
WI67_09970
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein
 
 
 
 0.957
WL94_22155
annotation not available
 
     0.730
WL94_25550
annotation not available
  
     0.623
DM42_6041
annotation not available
 
   
 0.599
WL94_04215
annotation not available
      
 0.541
WL94_22880
annotation not available
  
     0.516
WL94_31550
annotation not available
       0.493
DM42_5096
Conserved hypothetical protein
  
     0.492
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA
       0.448
WL94_31275
annotation not available
  
     0.441
Your Current Organism:
Burkholderia cepacia
NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717
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