rplI protein (Burkholderia cepacia) - STRING interaction network

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second shell of interactors

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Score

rplI

50S ribosomal protein L9; Binds to the 23S rRNA (150 aa)

Predicted Functional Partners:

rpsR

0.999

rpsF

0.999

rplS

0.997

rpsJ

0.996

rplQ

0.996

rpsB

0.996

rplC

0.996

rpmA

0.996

rplD

0.995

rplM

0.995

Your Current Organism:

Burkholderia cepacia

NCBI taxonomy Id: 292
Other names: ATCC 25416, B. cepacia, Burkholderia cepacia, Burkholderia cepacia genomovar I, CCUG 12691, CCUG 13226, CFBP 2227, CIP 80.24, DSM 7288, ICMP 5796, IFO 14074, JCM 5964, NBRC 14074, NCCB 76047, NCPPB 2993, NCTC 10743, NRRL B-14810, Pseudomonas cepacia, Pseudomonas kingii, Pseudomonas multivorans, strain 717-ICPB 25, strain Ballard 717

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplC	rplD	DM42_1473	DM42_1472	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	0.999
rplC	rplI	DM42_1473	DM42_3230	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	50S ribosomal protein L9; Binds to the 23S rRNA	0.996
rplC	rplM	DM42_1473	DM42_1163	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly	0.999
rplC	rplQ	DM42_1473	DM42_1446	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	L17- ribosomal protein L17	0.998
rplC	rplS	DM42_1473	DM42_755	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site	0.998
rplC	rpmA	DM42_1473	DM42_1257	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	L27- ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family	0.998
rplC	rpsB	DM42_1473	DM42_3079	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	rpsB_bact- ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family	0.999
rplC	rpsF	DM42_1473	DM42_3227	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA	0.998
rplC	rpsJ	DM42_1473	DM42_1474	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes	0.999
rplC	rpsR	DM42_1473	DM42_3229	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	0.997
rplD	rplC	DM42_1472	DM42_1473	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit	0.999
rplD	rplI	DM42_1472	DM42_3230	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	50S ribosomal protein L9; Binds to the 23S rRNA	0.995
rplD	rplM	DM42_1472	DM42_1163	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly	0.999
rplD	rplQ	DM42_1472	DM42_1446	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	L17- ribosomal protein L17	0.997
rplD	rplS	DM42_1472	DM42_755	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site	0.998
rplD	rpmA	DM42_1472	DM42_1257	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	L27- ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family	0.997
rplD	rpsB	DM42_1472	DM42_3079	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	rpsB_bact- ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family	0.999
rplD	rpsF	DM42_1472	DM42_3227	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA	0.998
rplD	rpsJ	DM42_1472	DM42_1474	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes	0.999
rplD	rpsR	DM42_1472	DM42_3229	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	0.998

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