Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DM42_3237 | DM42_3239 | DM42_3237 | DM42_3239 | annotation not available | annotation not available | 0.975 |
DM42_3237 | DM42_3241 | DM42_3237 | DM42_3241 | annotation not available | UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family | 0.956 |
DM42_3237 | arnA_2 | DM42_3237 | DM42_3238 | annotation not available | annotation not available | 0.985 |
DM42_3237 | arnC | DM42_3237 | DM42_3240 | annotation not available | annotation not available | 0.995 |
DM42_3239 | DM42_3237 | DM42_3239 | DM42_3237 | annotation not available | annotation not available | 0.975 |
DM42_3239 | DM42_3241 | DM42_3239 | DM42_3241 | annotation not available | UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family | 0.959 |
DM42_3239 | DM42_6414 | DM42_3239 | DM42_6414 | annotation not available | annotation not available | 0.926 |
DM42_3239 | arnA_2 | DM42_3239 | DM42_3238 | annotation not available | annotation not available | 0.997 |
DM42_3239 | arnC | DM42_3239 | DM42_3240 | annotation not available | annotation not available | 0.972 |
DM42_3239 | folD | DM42_3239 | DM42_2948 | annotation not available | Methylenetetrahydrofolate dehydrogenase (nadp+) / methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate | 0.948 |
DM42_3239 | glyA | DM42_3239 | DM42_1023 | annotation not available | Beta-eliminating lyase family protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism | 0.935 |
DM42_3239 | glyA2 | DM42_3239 | DM42_5664 | annotation not available | Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism | 0.926 |
DM42_3239 | metG | DM42_3239 | DM42_2632 | annotation not available | Methionyl-trna synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation | 0.968 |
DM42_3239 | purN | DM42_3239 | DM42_2557 | annotation not available | Phosphoribosylglycinamide formyltransferase 1; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate | 0.958 |
DM42_3241 | DM42_3237 | DM42_3241 | DM42_3237 | UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family | annotation not available | 0.956 |
DM42_3241 | DM42_3239 | DM42_3241 | DM42_3239 | UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family | annotation not available | 0.959 |
DM42_3241 | arnA_2 | DM42_3241 | DM42_3238 | UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family | annotation not available | 0.974 |
DM42_3241 | arnC | DM42_3241 | DM42_3240 | UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family | annotation not available | 0.956 |
DM42_6414 | DM42_3239 | DM42_6414 | DM42_3239 | annotation not available | annotation not available | 0.926 |
DM42_6414 | metG | DM42_6414 | DM42_2632 | annotation not available | Methionyl-trna synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation | 0.868 |
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